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These carrot applesauce muffins are made with whole wheat flour and other real food ingredients. This recipe is a huge hit with the kids; they taste just like carrot cake!
Featured Comment
This was a HUGE hit with all three of my kids! Thank you for this recipe. It is in regular rotation and gets rave reviews every time!
For those who are looking for cupcakes for little ones (i.e. smash cake), I would totally top one of these off with some homemade unsweetened whipped cream and call it a day. This would be perfect for your baby! And if you prefer to avoid honey for your really little ones (not recommended younger than 1 year old), then 100% pure maple syrup would work just fine as a substitute.
Are Muffins Made with Carrot and Apple Healthy?
Healthy can mean different things to different people. Since these carrot muffins are made with whole wheat flour and honey instead of sugar, they’re definitely a lot healthier than most muffin recipes.
Feel free to make your own applesauce! Read up on the types of apples.
The carrot and applesauce add a sweet flavor, but they’re also nutritious, too! These Sweet Potato Muffins are another healthy option.
Why Carrot is Great in Muffins
If you’re a fan of carrot cake you probably already know how delicious carrots can be as a baking ingredient. Naturally sweet, carrots help soften (and sweeten) anything they’re baked into. And, while it’s not the same as a complete healthy meal, it’s always nice when you can add a few extra veggies into what we eat.
How to Make This Homemade Carrot Muffin Recipe
- First, preheat the oven to 350 degrees F and line your muffin pans.
- While the oven heats, whisk together the dry ingredients (whole wheat flour, baking soda, cinnamon, ginger, and salt).
- In a separate bowl (I use an electric mixer), beat the softened butter, honey, egg, and vanilla on medium speed.
- Set mixer to low, then slowly beat in the flour mixture.
- Fold in the applesauce and shredded carrots.
- Divide batter evenly among 12 muffin cups a bake for 22-24 minutes, or until a toothpick pressed into the center comes out clean.
Can You Freeze These Muffins?
Absolutely! All my muffin recipes freeze well, including these carrot muffins. To freeze, simply cool completely then place in an airtight container. Muffins keep in the freezer for up to three months.
To thaw, warm up on the counter overnight or microwave for about 30 to 60 seconds. You can also put frozen muffins right into kids’ lunches and they should be thawed by the time they’re ready to eat!
Tips for Shredding Carrots
- You’ll need to peel your carrots before shredding them; carrot peels can sometimes make carrot muffins taste bitter.
- The easiest way to shred carrots is with a box style cheese grater, preferably using the smaller size holes.
- Some food processors can also shred carrots.
Can This Recipe Be Doubled?
Yes, but sometimes muffins can bake differently when the recipe is doubled, depending on your oven. If you run into issues, I’d recommend baking one tray of muffins at a time, which is better for even baking anyway!
Will This Recipe Work for Mini Muffins or a Loaf?
You can definitely make muffin muffins instead of full-sized ones, just adjust the cooking time to about 12-14 minutes so they don’t overbake.
We haven’t had the chance to try this recipe in a loaf pan or as a cake yet, but if you do let us know how it turns out in the comments!
Make Carrot Cake Muffins for Dessert
This recipe already uses carrot cake spices and ingredients—they’re basically carrot cake muffins! But if you want to turn these muffins into an easy real food dessert, simply add frosting.
Carrot cake is normally topped with cream cheese frosting, but that’s loaded with powdered sugar. Instead, make a cream cheese glaze by mixing 8 oz of softened cream cheese, ¼ cup of honey, and ½ teaspoon of vanilla.
Check out these Baked Apples too!






Lisa says
How much oil would you recommend to make this a dairy free recipe? Or any ideas other than oil?
Assistant to 100 Days (Amy) says
Hi Lisa. Coconut oil can be substituted 1:1 for butter. ~Amy
Becca says
My daughter has dairy and egg allergies among others. So I subbed coconut oil and a chia seed egg. Worked awesome! She's 18 mo running around yelling more more. Always looking for more ideas for her with her allergies! Thanks so much :)
Laura says
I've been debating what to do about a smash cake for my son. This is perfect! Thanks for the recipe, and all the great info on this site!
Meg says
I'm wondering if i could use carrots that i pureed up for little dude or would that mess up the consistency? Also, I'm curious why you chose to use butter instead of coconut oil. Since you introduced me to coconut oil, i use it for pretty much everything. Thanks so much!
Assistant to 100 Days (Amy) says
Hi Meg. It will change the consistency but I think it will still work. Regarding butter, sometimes Lisa just prefers baking with butter but does use them fairly interchangeably. ~Amy
Cc says
This is a great way to use up (for those of us who do juice) some carrot pulp! I used my carrot apple ginger pulp in here! Also I added raisins to some for variety. Thank you for another lovely recipe!
Lisa says
Can I substitute oil for the butter? how much would you use?
Assistant to 100 Days (Amy) says
Hi Lisa. It is a 1:1 substitution. ~Amy
Jane says
Hi I like the look of many of your recipes, why do you not post nutritional information for your food. Thanks.
Assistant to 100 Days (Amy) says
Hi Jane. We do not provide nutrition information on our recipes. We want people focusing on eating real foods/more whole foods and less on numbers. Here are some posts which help explain our philosophy: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/, https://www.100daysofrealfood.com/2013/01/23/portion-size-matters/, and https://www.100daysofrealfood.com/10-reasons-to-cut-out-processed-food/ and https://www.100daysofrealfood.com/2011/04/29/mini-pledge-week-8-stop-eating-when-you-feel-full/. There are many tools available online which can help calculate nutrition details for recipes. ~Amy
Anna says
Came across your Facebook page. Made these with my daughter today...what an easy, yummy, healthy and forgiving recipe....I was running out of a few ingredients, though. Used half butter, half coconut oil. Had to sub 2 ripe mashed bananas for applesauce and added half cup of dried cranberries. Left out the sweetener entirely. I realize that's a lot of changes to make, and I look forward to trying the original recipe, but they turned out great anyway!
Harriet says
Sounds great. What's the calorie and fiber count?
Assistant to 100 Days (Amy) says
Hi Harriet. We do not provide nutrition information. This post helps explain: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/. There are many tools available online if you wish to calculate details. ~Amy
Jane Reding says
As a diabetic, I would certainly love to have the carb and calorie counts for these recipes. This one certainly looks wonderful and I think I could work with it, if I only knew the numbers. All nutritional counts would be appreciated. Thanks!
Assistant to 100 Days (Amy) says
Hi there Jane. I am sorry but we do not provide nutrition details. We understand that there are conditions that require people to be very vigilant of numbers. However, part of our philosophy here is to not focus on the numbers, but instead, to focus on eating real food with real food ingredients. These posts will help explain our philosophy: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/, https://www.100daysofrealfood.com/2013/01/23/portion-size-matters/, and https://www.100daysofrealfood.com/10-reasons-to-cut-out-processed-food/ and https://www.100daysofrealfood.com/2011/04/29/mini-pledge-week-8-stop-eating-when-you-feel-full/. There are many tools available online which can help you calculate nutrition details for any recipe. Wishing you the best. ~Amy
Jane Darch says
Hi, thanks for the reply to my post about calorie infomation. Do you have suggestions for people with food intolerance like gluten and dairy? I really like your apporach to food and the enthuiasm for preparing food that is reflected in your blog. All the best, Jane
Melody says
Just made these, but used nutmeg instead of ginger- these things are amazing!! Super super yummy!!
Ann says
Just made these and they didn't rise very much but they taste great. I used regular sized cupcake tin and got 16 muffins. Tomorrow I will try a batch with coconut oil.
Julia says
Regular whole wheat flour doesn't rise as much as white flour due to lack of gluten. I usually use mostly whole wheat but include some gluten flour when baking. I wasn't aware of this when I switched to whole wheat flour and wondered why my baked donuts didn't rise well. Now I use 2/3 whole wheat to 1/3 flour with gluten. I think you can get whole wheat flour made specifically for baking.
Sarah says
Muffins are leavened by baking soda or powder, not yeast, so gluten isn't an issue, like it is with yeast breads. That being said, I think whole wheat pastry flour (even lower in gluten then regular WW) works the best for baking muffins and cookies and pancakes etc. as it has a softer lighter texture, which I guess makes it easier for the soda/powder to raise it. If your donuts are made with yeast, try using sprouted whole wheat flour or soaking your flour first, I found a fantastic recipe for 100% WW bread and it works great every time on Heavenly Homemakers, maybe you could try to do some of the soaking steps from that recipe for your donuts if you wanted to go 100% whole wheat.
Angie says
These are wonderful! thanks for a new fall favorite:)
Bridget says
Just made these with the 5 year old. Delicious. The best thing was they didn't taste 'whole wheaty'. We use whole wheat in everything and sometimes it just gets a bit boring, but not these puppies! They turned out light and moist. And a beautiful color. Yummo. Will make again. New fave muffin recipe.
Malinda says
Just made! Love! Thank you! For fun I added 1/4 cup of flaxseed too!!
Kim says
Can I substitute the egg for something else? My son is allergic to eggs.
Erin says
I used Bob's Red Mill Egg Replacer. You can also sub 1 tbsp ground flax meal and 3 tbsp water for each egg.
Trish says
These sound amazing! And I just made a TON of applesauce so this will work perfectly. Thank you for all of your amazing, inspiring snack ideas. My boys love them.
Hayley says
I only had a half cup of pure applesauce, but combined that with a half cup of jarred baby food blueberry-applesauce and they came out great. I made them in mini-muffin tins and am having a hard time keeping MYSELF from eating too many!
beth forsell says
Is the butter unsalted or salted? Can I use regular white flour? Can I use jarred baby food carrots? Thanks these sound great!
Assistant to 100 Days (Amy) says
Hi Beth. We usually use unsalted but if salted is all you have on hand, it will be fine. You could cut back on the added salt. We do not use white flour in our recipes, only 100% whole grain flours. Baby food carrots might work but the consistency is obviously different. ~Amy
Rachael says
Any idea on the calorie count here ?
Assistant to 100 Days (Amy) says
Hi Rachael. We do not provide nutrition information but there are many tools available online if you would like to calculate details. This post can help explain our philosophy: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/. ~Amy
Erin says
Used coconut oil and Bobs Red Mill Egg Replacer(dairy and egg allergy for one of my littles). Really good!!! Will add raisins next time!!!
Natalie says
I just realized I put half a cup of applesauce instead of 1 cup! I hope they still turn out they are already on the oven!
Pam says
Thanks for the recipe Lisa! Just popped it into the oven as a bread loaf.
Melanie says
Any substitute for applesauce? We have all the other ingredients on hand.....and it's naptime! :) Would be great to make them for a surprise when my sleepyheads wake up. Yummy recipe!!
Kris D. says
Do you have any greek yogurt?
BetsyD says
How about apple butter?
Justyna says
Yum, I was just thinking about making carrot muffins! If I wanted to add raisins and walnuts, how much would you recommend?
Assistant to 100 Days (Amy) says
Hi. I think you could add up to 1 cup total. ~Amy
Sandy says
Thanks so much for this recipe! These look awesome! My 12 month old has a dairy allergy - so always looking for simple recipes that can easily be turned dairy free. Thanks for the coconut oil recommendation! Can't wait to make these. I have been making your pumpkin muffin recipe every week - he gobbles them up!
Laura says
Can I use the leftover pulp from making carrot juice? Usually I usually just compost it but would like to find a better use for it and this recipe would be great! Sounds yummy! I will definitely be making these either way!
Kris D. says
Laura,
I save all of my pulp.. carrot pulp is great for muffins! When you juice, make sure you stem/seed all your items, juice, then I press the pulp into ice cube trays and freeze. Pop them out into a freezer bag and use them for lots of things. I use my veg combos for soups and marinara.. carrot and apple for muffins. Adds fiber and awesome flavor!!
Becky says
My kids and I made these this morning. Unfortunately instead of reading the recipe from my computer I just wrote it down quickly to follow. I wrote down 1 teaspoon of salt instead 1/2 and I could notice it! But the kids still gobbled them up. I'll pay better attention next time. ;-)
Ruth Lynn says
Kim, w use a mix of oat flour and oats in many of our muffins. They will probably be heavier; but, if you are used to GF, you probably won't mind.
Sadie says
I will be making these with my 3 year old this afternoon...she loves to help! My older daugher's having a friend sleep over tonight, so this will be a perfect snack for when they get off the bus! Can't wait to try them.
Ashley says
These are delicious! My two year old is currently munching on one. In his words, "Yum! Good!" I plan on doubling the recipe next time so I can keep some in the freezer.
Erin says
How many does this batch make? Also what kind of wheat flour did you use? Was it regular whole wheat or white whole wheat?
Assistant to 100 Days (Amy) says
Hi Erin. It makes about a dozen. You could use either type of flour. Lisa usually prefers white whole wheat in her baking. ~Amy
Jamie says
Charlie- Yes you can substitute coconut oil in place of butter. It is a one to one swap.
Kim says
Can these be made with another flour? Gluten free? Looks so yummy!
Assistant to 100 Days (Amy) says
Hi Kim. We have not tried substitutions in this recipe. If you do, let us know how it turns out and what your used. ~Amy
Ashley says
These look great! I've always wondered if I could sub ground oats instead of white flour. I'm trying to cut wheat out of my diet. Since there is baking soda, it should fluff it up. Maybe I'll try it! I love a good carrot ANYTHING!
Ashley says
Sorry WHEAT flour, not white!
Kelly says
I love how you use super simple ingredients that I actually have in my house! I'm gonna whip these up for a road trip we are taking today
Lisa says
Thank you Kelly - that is not by accident (I like recipes like that, too)!
Kelly says
Yep they just came out of the oven, and no surprise- they are fantastic!! Thank you so much for sharing!!
Katie Kleibl says
Is there a good substitution for butter? my son has a potential dairy allergy so we are cutting out all dairy to see if his condition improves. These muffins look great, and I think my kids would like them, I just am not a baker so I don't know how to substitute for butter. Thank you!
Lisa says
I would definitely try softened coconut oil instead - good luck!
Katie says
Thank you so much!
AJ says
These sound delicious! I don't have a stand mixer. Would a hand held mixer with regular beaters work or would you recommend whisking by hand? Thanks!
Lisa says
The hand held mixer would be great for this!
Charlie says
Could I substitute coconut oil for the butter? My family is dairy-free. These sound awesome!
Lisa says
Yes, I think that would work like a charm :)
virginia says
just did it this morning and they were great!
Arimey says
These sound delicious! Quick question - would you sub the coconut oil 1:1 or can/should you use less?
Assistant to 100 Days (Amy) says
Hi there. Typically, coconut oil and butter sub 1:1. ~Amy
laramealor.com says
Can not wait to try this! Thanks for sharing .