
Want to Save this Recipe?
Enter your email below & we'll send it straight to your inbox. Plus you'll get great new recipes from us every week!
These carrot applesauce muffins are made with whole wheat flour and other real food ingredients. This recipe is a huge hit with the kids; they taste just like carrot cake!
Featured Comment
This was a HUGE hit with all three of my kids! Thank you for this recipe. It is in regular rotation and gets rave reviews every time!
For those who are looking for cupcakes for little ones (i.e. smash cake), I would totally top one of these off with some homemade unsweetened whipped cream and call it a day. This would be perfect for your baby! And if you prefer to avoid honey for your really little ones (not recommended younger than 1 year old), then 100% pure maple syrup would work just fine as a substitute.
Are Muffins Made with Carrot and Apple Healthy?
Healthy can mean different things to different people. Since these carrot muffins are made with whole wheat flour and honey instead of sugar, they’re definitely a lot healthier than most muffin recipes.
Feel free to make your own applesauce! Read up on the types of apples.
The carrot and applesauce add a sweet flavor, but they’re also nutritious, too! These Sweet Potato Muffins are another healthy option.
Why Carrot is Great in Muffins
If you’re a fan of carrot cake you probably already know how delicious carrots can be as a baking ingredient. Naturally sweet, carrots help soften (and sweeten) anything they’re baked into. And, while it’s not the same as a complete healthy meal, it’s always nice when you can add a few extra veggies into what we eat.
How to Make This Homemade Carrot Muffin Recipe
- First, preheat the oven to 350 degrees F and line your muffin pans.
- While the oven heats, whisk together the dry ingredients (whole wheat flour, baking soda, cinnamon, ginger, and salt).
- In a separate bowl (I use an electric mixer), beat the softened butter, honey, egg, and vanilla on medium speed.
- Set mixer to low, then slowly beat in the flour mixture.
- Fold in the applesauce and shredded carrots.
- Divide batter evenly among 12 muffin cups a bake for 22-24 minutes, or until a toothpick pressed into the center comes out clean.
Can You Freeze These Muffins?
Absolutely! All my muffin recipes freeze well, including these carrot muffins. To freeze, simply cool completely then place in an airtight container. Muffins keep in the freezer for up to three months.
To thaw, warm up on the counter overnight or microwave for about 30 to 60 seconds. You can also put frozen muffins right into kids’ lunches and they should be thawed by the time they’re ready to eat!
Tips for Shredding Carrots
- You’ll need to peel your carrots before shredding them; carrot peels can sometimes make carrot muffins taste bitter.
- The easiest way to shred carrots is with a box style cheese grater, preferably using the smaller size holes.
- Some food processors can also shred carrots.
Can This Recipe Be Doubled?
Yes, but sometimes muffins can bake differently when the recipe is doubled, depending on your oven. If you run into issues, I’d recommend baking one tray of muffins at a time, which is better for even baking anyway!
Will This Recipe Work for Mini Muffins or a Loaf?
You can definitely make muffin muffins instead of full-sized ones, just adjust the cooking time to about 12-14 minutes so they don’t overbake.
We haven’t had the chance to try this recipe in a loaf pan or as a cake yet, but if you do let us know how it turns out in the comments!
Make Carrot Cake Muffins for Dessert
This recipe already uses carrot cake spices and ingredients—they’re basically carrot cake muffins! But if you want to turn these muffins into an easy real food dessert, simply add frosting.
Carrot cake is normally topped with cream cheese frosting, but that’s loaded with powdered sugar. Instead, make a cream cheese glaze by mixing 8 oz of softened cream cheese, ¼ cup of honey, and ½ teaspoon of vanilla.
Check out these Baked Apples too!






Jennifer says
My family loves these. I have made them with coconut oil instead of butter and maple syrup instead of honey and they turned out great. I have also used ground flax mixed with water instead of an egg and added shredded apple(with the carrot), still turned out great. It's a wonderful recipe.
Natalie says
My daughter isn't getting enough Vitamin D, and I heard that Greek yogurt was a good substitute for butter. I was thinking of replacing the butter with fortified Greek yogurt and replacing the applesauce with shredded apples. Any thoughts on how this would turn out? I don't have the best instincts when it comes to baking. Sorry if a question like this was already asked, and thanks in advance for any response.
Nat
Amy Taylor (comment moderator) says
Hi Natalie. We've not tried but I do think it will work.
Carrie says
These muffins are my new obsession right now!! I can't stop eating them! Oh and my 20 month old son loves them! He eats them for breakfast or a snack.
Traveler says
Would like to make 1/2 or the recepie. If i use 1 whole egg for the 1/2 of the recepie, what other ingridients should i adjust to keep the right dough consistency?
Amy Taylor (comment moderator) says
Hi there. We've not tried cutting this recipe in half. This might help: http://www.tasteofhome.com/references/how-to-cut-down-recipes-or-decrease-servings.
Joanna says
I just wanted to say that I just made these tonight but because I didn't have any applesauce I used puréed/pulsed beets with a little squeezed orange to make the consistency similar to applesauce and it turned out great! Thank you, I will definitely beaking again
Karmen S says
This are delicious! I added 1/4 teaspoon of cardamom with the other spices and they turned out very flavorful.
tracie b says
I made my own chinky applesauce with peeled apples, water and cinnamon...then added to the mix with organic carrots. DELICIOUS!!
tracie b says
*chunky
Pam says
Just made these with maple syrup instead of honey so my baby could eat them. They are amazing!!! Best muffins I have ever made. Thank you!
Kim says
OMG!!!! These muffins are AMAZING! my kids think they are candy muffins. We are calling them love muffins, since they love them so much. It is the first thing in three years to get my 6 year old to not choose a frozen blueberry waffle (he eats three of these instead!).
Sara says
Delicious! My three picky eaters loved them. I only had organic sweetened applesauce and they weren't too sweet.
Fran says
Oh. My. These were just too delicious to even articulate. Moist, flavorful, absolute goodness! I will try with coconut butter instead of oil since I try to be dairy free - but following the recipe directly, just wonderful!
Megan says
Excited to try these! looks so simple. Just a general question on baking with coconut oil. Do you typically melt the oil first?
Amy Taylor (comment moderator) says
Hi Megan. Yes, melt the coconut oil first: https://www.100daysofrealfood.com/2012/02/07/how-to-cook-with-coconut-oil/.
Sharon Reeder says
I'm wondering if anyone has tried this substituting the Wheat flour for the alternative (coconut/almond flour) for those who are gluten or grain free? If so what measurements did you use and did you have to add or subtract any ingredients to make it work?
Nicole says
I just made a batch and used Bob's GF 1:1 baking mix and they turned out great.
Catherine says
I made these last week for my Monday morning client. She wrote to me and told me that these were, by far, their favorite muffins that I've made in over a year and a half of cooking for them. THANK YOU! I omitted the egg, because she didn't have any in her refrigerator. ;)
Jayne says
Yes! This muffins are now my favorite also! I do need the nutritional value, if possible.
Amy Taylor (comment moderator) says
Hello. We do not provide nutrition information on our recipes. This post will help you understand why: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/.
Renee says
Do you have the nutrition facts for these muffins? Thank you!
Amy Taylor (comment moderator) says
Hi. We do not provide nutrition information on our recipes. This post will help you understand why: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/.
Miss A says
For high altitude families... I removed 1T of honey and added 2T of applesauce. Increased backing temp to 360F and took the muffins out promptly at 22 min. I used a greased (Crisco) muffin pan & removed the muffins right after taking them out of the oven, cooled on a cooling wrack so the outsides don't get to crusty. Love them.
Laura says
I live in high altitude (about 7,600 ft.) and I made these according to the recipe except they only had to bake for 15 minutes. They turned out perfect!!!
Erin says
Quick question. I noticed that in some of the recipes you specify that you use king Arthur's white whole wheat flour. Do you typically use that when the recipe calls for whole wheat flour? For example your wheat bread. Do you use white whole wheat?
Amy Taylor (comment moderator) says
Hi Erin. Lisa mostly uses straight up whole wheat but the white whole wheat is always and option, especially if you are just transitioning or prefer a lighter taste and texture. ~Amy
hannah says
I loved the sounds of this recipe, however when I tried itI loved the sounds of this recipe, however when I tried it today, the muffins didn't rise, in fact they kind of caved in. I tried cooking them longer but they just ended up starting to get burnt. When I finally took them out, the middles were raw. What happened??? I followed the directions exactly so I don't know what it would have been! can baking soda go bad? I've had it for about a year and a half? today, the muffins didn't rise, in fact they kind of caved in. I tried cooking them longer but they just ended up starting to get burnt. When I finally took them out, the middles were raw. What happened??? I followed the directions exactly so I don't know what it would have been! can baking soda go bad? I've had it for about a year and a half?
Jeannette says
I had the same problem, where did we go wrong?
Amy Taylor (comment moderator) says
Hi there. It is important to use all fresh ingredients. Any old ingredients could contribute to a recipe not working correctly.
Jennifer says
These are very good muffins. I made a few alterations and thought I would share in case anyone else is pondering similar modifications. I doubled the recipe but only used one stick of butter (1/2 c), substituting 1/4 c of plain yogurt for the rest of the oil. I also used only 1/2 c of honey, adding an extra 1/2 c of applesauce to make up the difference. They turned out great. They are especially delicious with some cream cheese on the top! I think using the full amount of honey would make them a great cupcake substitution. With half the honey they were plenty sweet for a snack or breakfast.
Emily says
I made these yesterday and these muffins were amazing. I'm making more today so that I can freeze them. Thanks for this recipe!
Elizabeth says
This recipe is amazing!!! I'm Lucky if they last 2 days in my house between my husband, 2 girls, and I. Thank you for the delicious recipes!!!
Rachel says
I made these last night for breakfast this morning, and my 3-year-old loved them! They are so moist, and just sweet enough. I didn't have ginger on hand, so I used lemon zest instead. Was very good, but I'd be curious to see the difference with the ginger. Next time I will add raisins and walnuts for extra texture. I love your site, and every recipe I've tried from your book has been delicious!
tess says
Can you post directions on how to freeze individually? Thank you!
Amy Taylor (comment moderator) says
Hi Tess. I guess I would use (and re-use and re-use...) individual small zipper bags or sandwich bags for one or two muffins, removing the excess air from each bag. With zipper bags, I use a straw to suck out the air. :)
Kristin says
Hi I am not seeing the carrot cake recipe online but am using the recipe in the book. I used the cook time and its not done... will cook longer but curious since the recipe is not onine if maybe the cook time is not correct? Any insight is appreciated. Thanks and love the book!
reinu says
perfect healthy recipe
Opal King says
I made these yesterday afternoon and absolutely loved them! The flavor was amazing, especially for something without sugar and with whole wheat. I let them cool completely, even longer than usual, then put them in a tupperware container. When I woke up today, the carrots that were close to the surface of the muffin had turned green! Is this normal? Is this mold? I went through a some of the comments and didn't see anything. I used a store bought bag of matchstick carrots so worried maybe they were too big? I want to make these again, but want to make sure it isn't mold!
Amy Taylor (comment moderator) says
Hello Opal. Carrots sometimes oxidize when they come in contact with baking soda which can result in the green color.
Tina says
great recipe! Do these need to be refrigerated?
Amy Taylor (comment moderator) says
Hi Tina. I typically freeze these if I need to keep them past a couple days. The fridge tends to dry them out.
Candace says
I made these today and they were a hit with my kids and husband!! My husband wants me to make a double batch to bring to his office! On a side note, do u know if u can use coconut flour instead to make them gluten free?? Thanks!!
Amy Taylor (comment moderator) says
Hi Candace. You can certainly experiment with different flour combinations in order to make a gluten free version. You could not substitute coconut flour 1:1, however, because it is very different from wheat flour.
Jaqueline says
Do you recommend salted or unsalted butter??????
Amy Taylor (comment moderator) says
Hi there. I have used both in this recipe and do not notice any difference.
Marlana says
I still can't get over how good these muffins taste! These were a hit with my whole family. Thank you!
Carol Armstrong says
They're OK, but a bit boring and are more cake-like than muffin-like.
The recipe supposedly makes 1 doz "oversized" muffins? It actually makes 1 doz regular-sized cupcakes.
Jacque says
I've tried these twice and both times the outsides are cooked fully, but the inside is all mushy and wet. Maybe they're supposed to be? Or maybe I need to squeeze the moisture out of the carrots?
Amy Taylor (comment moderator) says
Hi there. Ovens can vary as to how they cook. You may want to cook a little longer and reduce the temperature a little.
Samantha says
Would these still have that muffin/cake like fluffiness if I just eliminate the honey (or maple syrup)? I want to use this recipe for my daughter's smash cake, but because I'm trying to encourage less sweets I only want it sweetened with the applesauce. Thanks!
Amy Taylor (comment moderator) says
Hi. We've not tried eliminating the honey. If you add more applesauce in its place, I think it would work okay.
Nicole says
I just made these - but had to sub the whole wheat flour with 210g of gluten free flour due to an intolerance in our household. Let me just say, my house smells amazing! My 4 year old had a blast helping me. AND they taste GREAT!!!
Sara says
I subbed parsnips from our CSA box for the carrots and the muffins were a huge hit with my kids! I also added in some nutmeg which was a nice touch. I make the original version on a regular basis for my preschooler and baby. Love how moist they are!
Brittany says
Love these muffins and have made many times as regular muffins, mini muffins and mini loaf breads. I used coconut oil this time and it seems the carrot flavor is more pronounced. Definitely like butter in these ones better. The one draw back on these muffins for me is the time to grate carrots. I pulled out my kitchen aid mixer and grater attachments and made enough extra grated carrots to freeze 3 double batches so we will see how the frozen carrots work out. i plan to fully thaw before adding. I always double this recipe and get 30 regular muffins. I have made these for non foodies and have always received compliments. I think this is one that anyone will enjoy! Thanks! Keep them coming.
Shawnna says
Where did the recipe go? I was hoping to make these tonight. Help!
Amy Taylor (comment moderator) says
Hi. Sorry, there must have been a short glitch.
Kajay says
I cant see the recipe on the website. Has it been moved or is there something wrong? I have tried google crome and internet explorer
Amy Taylor (comment moderator) says
Hi. Sorry, there must have been a short glitch.
Barb says
Can you use whole wheat pastry flour?
Kelly says
In my opinion, it's perfect for muffins. All I use.