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Home » Recipes

Whole Wheat Carrot Applesauce Muffins

151 Reviews / 4.8 Average
This recipe is by far the new favorite muffin in our house. Move over blueberry, zucchini, and even pumpkin—these are so deeelicious and could be eaten with breakfast, lunch, or even dinner (maybe as a side to some fall soup?)!
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carrot applesauce muffins

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These carrot applesauce muffins are made with whole wheat flour and other real food ingredients. This recipe is a huge hit with the kids; they taste just like carrot cake!

Featured Comment

This was a HUGE hit with all three of my kids! Thank you for this recipe. It is in regular rotation and gets rave reviews every time!
- Ashley Oswald

For those who are looking for cupcakes for little ones (i.e. smash cake), I would totally top one of these off with some homemade unsweetened whipped cream and call it a day. This would be perfect for your baby! And if you prefer to avoid honey for your really little ones (not recommended younger than 1 year old), then 100% pure maple syrup would work just fine as a substitute.

Are Muffins Made with Carrot and Apple Healthy?

Healthy can mean different things to different people. Since these carrot muffins are made with whole wheat flour and honey instead of sugar, they’re definitely a lot healthier than most muffin recipes.

Feel free to make your own applesauce! Read up on the types of apples.

The carrot and applesauce add a sweet flavor, but they’re also nutritious, too! These Sweet Potato Muffins are another healthy option.

Why Carrot is Great in Muffins

If you’re a fan of carrot cake you probably already know how delicious carrots can be as a baking ingredient. Naturally sweet, carrots help soften (and sweeten) anything they’re baked into. And, while it’s not the same as a complete healthy meal, it’s always nice when you can add a few extra veggies into what we eat.

How to Make This Homemade Carrot Muffin Recipe

  1. First, preheat the oven to 350 degrees F and line your muffin pans.
  2. While the oven heats, whisk together the dry ingredients (whole wheat flour, baking soda, cinnamon, ginger, and salt).
  3. In a separate bowl (I use an electric mixer), beat the softened butter, honey, egg, and vanilla on medium speed.
  4. Set mixer to low, then slowly beat in the flour mixture.
  5. Fold in the applesauce and shredded carrots.
  6. Divide batter evenly among 12 muffin cups a bake for 22-24 minutes, or until a toothpick pressed into the center comes out clean.

Can You Freeze These Muffins?

Absolutely! All my muffin recipes freeze well, including these carrot muffins. To freeze, simply cool completely then place in an airtight container. Muffins keep in the freezer for up to three months.

To thaw, warm up on the counter overnight or microwave for about 30 to 60 seconds. You can also put frozen muffins right into kids’ lunches and they should be thawed by the time they’re ready to eat!

Tips for Shredding Carrots

  • You’ll need to peel your carrots before shredding them; carrot peels can sometimes make carrot muffins taste bitter.
  • The easiest way to shred carrots is with a box style cheese grater, preferably using the smaller size holes.
  • Some food processors can also shred carrots.

Can This Recipe Be Doubled?

Yes, but sometimes muffins can bake differently when the recipe is doubled, depending on your oven. If you run into issues, I’d recommend baking one tray of muffins at a time, which is better for even baking anyway!

Will This Recipe Work for Mini Muffins or a Loaf?

You can definitely make muffin muffins instead of full-sized ones, just adjust the cooking time to about 12-14 minutes so they don’t overbake.

We haven’t had the chance to try this recipe in a loaf pan or as a cake yet, but if you do let us know how it turns out in the comments!

Make Carrot Cake Muffins for Dessert

This recipe already uses carrot cake spices and ingredients—they’re basically carrot cake muffins! But if you want to turn these muffins into an easy real food dessert, simply add frosting.

Carrot cake is normally topped with cream cheese frosting, but that’s loaded with powdered sugar. Instead, make a cream cheese glaze by mixing 8 oz of softened cream cheese, ¼ cup of honey, and ½ teaspoon of vanilla.

Check out these Baked Apples too!

carrot applesauce muffins

Whole-Wheat Carrot Applesauce Muffins

This recipe is by far the new favorite muffin in our house. Move over blueberry, zucchini, and even pumpkin—these are so deeelicious and could be eaten with breakfast, lunch, or even dinner (maybe as a side to some fall soup?)!
151 Reviews / 4.8 Average
Prep Time: 10 minutes mins
Cook Time: 22 minutes mins
Total Time: 32 minutes mins
Course: Breakfast, Snacks & Appetizers, Treats
Cuisine: American
Method: Baked Goods, Freezer Friendly
Diet: Peanut/Tree Nut-Free, Vegetarian
Print Recipe
Servings: 12 muffins
Save Recipe Saved!

Ingredients
  

  • 1 ½ cups whole-wheat flour
  • 1 teaspoon baking soda
  • 1 teaspoon cinnamon (ground)
  • ½ teaspoon ginger (ground)
  • ½ teaspoon salt
  • ½ cup butter (softened (but not melted), 1 stick)
  • ½ cup honey
  • 1 egg
  • 1 teaspoon pure vanilla extract
  • 1 cup applesauce (unsweetened)
  • ¾ cup carrot (shredded)

Instructions
 

  • Preheat your oven to 350 degrees F. Line a muffin pan with paper, foil, or silicone liners, and set aside.
  • In a medium bowl whisk together the flour, baking soda, cinnamon, ginger, and salt.
  • In a large bowl fitted with an electric whisk (or beaters), mix the butter, honey, egg and vanilla together on medium speed. Turn the speed down and slowly add in the flour mixture until well combined. The batter will be fairly thick at this point.
  • Using a spatula, carefully fold in the applesauce and carrots (I used a cheese grater to shred the carrots). Divide the batter evenly among the muffin cups. Bake for 22 to 24 minutes or until a toothpick comes and muffins are beginning to turn golden brown on top. Enjoy!

Notes

We recommend organic ingredients when feasible.
Nutrition Facts
Nutrition Facts
Whole-Wheat Carrot Applesauce Muffins
Amount Per Serving
Calories 179 Calories from Fat 72
% Daily Value*
Fat 8g12%
Saturated Fat 5g31%
Cholesterol 34mg11%
Sodium 267mg12%
Potassium 70mg2%
Carbohydrates 25g8%
Fiber 2g8%
Sugar 14g16%
Protein 3g6%
Vitamin A 1600IU32%
Vitamin C 0.7mg1%
Calcium 19mg2%
Iron 0.5mg3%
* Percent Daily Values are based on a 2000 calorie diet.
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49.7K shares

About Lisa Leake

Lisa is a wife, mother, foodie, blogger, and #1 New York Times Best-selling author who is on a mission to cut out processed food.

Comments

  1. Jennifer says

    March 23, 2015 at 6:03 pm

    My family loves these. I have made them with coconut oil instead of butter and maple syrup instead of honey and they turned out great. I have also used ground flax mixed with water instead of an egg and added shredded apple(with the carrot), still turned out great. It's a wonderful recipe.

    Reply
  2. Natalie says

    March 09, 2015 at 3:21 pm

    My daughter isn't getting enough Vitamin D, and I heard that Greek yogurt was a good substitute for butter. I was thinking of replacing the butter with fortified Greek yogurt and replacing the applesauce with shredded apples. Any thoughts on how this would turn out? I don't have the best instincts when it comes to baking. Sorry if a question like this was already asked, and thanks in advance for any response.

    Nat

    Reply
    • Amy Taylor (comment moderator) says

      March 10, 2015 at 1:04 pm

      Hi Natalie. We've not tried but I do think it will work.

      Reply
  3. Carrie says

    March 05, 2015 at 10:17 am

    5 stars
    These muffins are my new obsession right now!! I can't stop eating them! Oh and my 20 month old son loves them! He eats them for breakfast or a snack.

    Reply
  4. Traveler says

    February 26, 2015 at 5:18 pm

    Would like to make 1/2 or the recepie. If i use 1 whole egg for the 1/2 of the recepie, what other ingridients should i adjust to keep the right dough consistency?

    Reply
    • Amy Taylor (comment moderator) says

      March 09, 2015 at 1:17 pm

      Hi there. We've not tried cutting this recipe in half. This might help: http://www.tasteofhome.com/references/how-to-cut-down-recipes-or-decrease-servings.

      Reply
  5. Joanna says

    February 24, 2015 at 5:23 pm

    I just wanted to say that I just made these tonight but because I didn't have any applesauce I used puréed/pulsed beets with a little squeezed orange to make the consistency similar to applesauce and it turned out great! Thank you, I will definitely beaking again

    Reply
  6. Karmen S says

    February 24, 2015 at 5:22 pm

    This are delicious! I added 1/4 teaspoon of cardamom with the other spices and they turned out very flavorful.

    Reply
  7. tracie b says

    February 23, 2015 at 10:15 pm

    I made my own chinky applesauce with peeled apples, water and cinnamon...then added to the mix with organic carrots. DELICIOUS!!

    Reply
    • tracie b says

      February 23, 2015 at 10:16 pm

      *chunky

      Reply
  8. Pam says

    February 22, 2015 at 9:14 am

    Just made these with maple syrup instead of honey so my baby could eat them. They are amazing!!! Best muffins I have ever made. Thank you!

    Reply
  9. Kim says

    February 18, 2015 at 4:13 pm

    5 stars
    OMG!!!! These muffins are AMAZING! my kids think they are candy muffins. We are calling them love muffins, since they love them so much. It is the first thing in three years to get my 6 year old to not choose a frozen blueberry waffle (he eats three of these instead!).

    Reply
  10. Sara says

    February 18, 2015 at 8:58 am

    5 stars
    Delicious! My three picky eaters loved them. I only had organic sweetened applesauce and they weren't too sweet.

    Reply
  11. Fran says

    February 17, 2015 at 2:25 pm

    Oh. My. These were just too delicious to even articulate. Moist, flavorful, absolute goodness! I will try with coconut butter instead of oil since I try to be dairy free - but following the recipe directly, just wonderful!

    Reply
  12. Megan says

    February 17, 2015 at 12:48 pm

    Excited to try these! looks so simple. Just a general question on baking with coconut oil. Do you typically melt the oil first?

    Reply
    • Amy Taylor (comment moderator) says

      February 19, 2015 at 9:44 am

      Hi Megan. Yes, melt the coconut oil first: https://www.100daysofrealfood.com/2012/02/07/how-to-cook-with-coconut-oil/.

      Reply
  13. Sharon Reeder says

    February 16, 2015 at 9:00 pm

    I'm wondering if anyone has tried this substituting the Wheat flour for the alternative (coconut/almond flour) for those who are gluten or grain free? If so what measurements did you use and did you have to add or subtract any ingredients to make it work?

    Reply
    • Nicole says

      February 17, 2015 at 1:42 pm

      I just made a batch and used Bob's GF 1:1 baking mix and they turned out great.

      Reply
  14. Catherine says

    February 15, 2015 at 1:11 pm

    5 stars
    I made these last week for my Monday morning client. She wrote to me and told me that these were, by far, their favorite muffins that I've made in over a year and a half of cooking for them. THANK YOU! I omitted the egg, because she didn't have any in her refrigerator. ;)

    Reply
  15. Jayne says

    February 15, 2015 at 9:26 am

    Yes! This muffins are now my favorite also! I do need the nutritional value, if possible.

    Reply
    • Amy Taylor (comment moderator) says

      February 18, 2015 at 6:25 pm

      Hello. We do not provide nutrition information on our recipes. This post will help you understand why: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/.

      Reply
  16. Renee says

    February 14, 2015 at 7:50 am

    5 stars
    Do you have the nutrition facts for these muffins? Thank you!

    Reply
    • Amy Taylor (comment moderator) says

      February 18, 2015 at 6:25 pm

      Hi. We do not provide nutrition information on our recipes. This post will help you understand why: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/.

      Reply
  17. Miss A says

    February 01, 2015 at 10:55 am

    4 stars
    For high altitude families... I removed 1T of honey and added 2T of applesauce. Increased backing temp to 360F and took the muffins out promptly at 22 min. I used a greased (Crisco) muffin pan & removed the muffins right after taking them out of the oven, cooled on a cooling wrack so the outsides don't get to crusty. Love them.

    Reply
    • Laura says

      May 06, 2015 at 7:25 pm

      5 stars
      I live in high altitude (about 7,600 ft.) and I made these according to the recipe except they only had to bake for 15 minutes. They turned out perfect!!!

      Reply
  18. Erin says

    January 30, 2015 at 2:35 pm

    Quick question. I noticed that in some of the recipes you specify that you use king Arthur's white whole wheat flour. Do you typically use that when the recipe calls for whole wheat flour? For example your wheat bread. Do you use white whole wheat?

    Reply
    • Amy Taylor (comment moderator) says

      February 02, 2015 at 11:52 am

      Hi Erin. Lisa mostly uses straight up whole wheat but the white whole wheat is always and option, especially if you are just transitioning or prefer a lighter taste and texture. ~Amy

      Reply
  19. hannah says

    January 28, 2015 at 10:43 pm

    I loved the sounds of this recipe, however when I tried itI loved the sounds of this recipe, however when I tried it today, the muffins didn't rise, in fact they kind of caved in. I tried cooking them longer but they just ended up starting to get burnt. When I finally took them out, the middles were raw. What happened??? I followed the directions exactly so I don't know what it would have been! can baking soda go bad? I've had it for about a year and a half? today, the muffins didn't rise, in fact they kind of caved in. I tried cooking them longer but they just ended up starting to get burnt. When I finally took them out, the middles were raw. What happened??? I followed the directions exactly so I don't know what it would have been! can baking soda go bad? I've had it for about a year and a half?

    Reply
    • Jeannette says

      January 30, 2015 at 4:35 am

      I had the same problem, where did we go wrong?

      Reply
    • Amy Taylor (comment moderator) says

      February 01, 2015 at 11:04 am

      Hi there. It is important to use all fresh ingredients. Any old ingredients could contribute to a recipe not working correctly.

      Reply
  20. Jennifer says

    January 28, 2015 at 2:36 pm

    These are very good muffins. I made a few alterations and thought I would share in case anyone else is pondering similar modifications. I doubled the recipe but only used one stick of butter (1/2 c), substituting 1/4 c of plain yogurt for the rest of the oil. I also used only 1/2 c of honey, adding an extra 1/2 c of applesauce to make up the difference. They turned out great. They are especially delicious with some cream cheese on the top! I think using the full amount of honey would make them a great cupcake substitution. With half the honey they were plenty sweet for a snack or breakfast.

    Reply
  21. Emily says

    January 27, 2015 at 3:10 pm

    I made these yesterday and these muffins were amazing. I'm making more today so that I can freeze them. Thanks for this recipe!

    Reply
  22. Elizabeth says

    January 15, 2015 at 1:27 pm

    This recipe is amazing!!! I'm Lucky if they last 2 days in my house between my husband, 2 girls, and I. Thank you for the delicious recipes!!!

    Reply
  23. Rachel says

    January 14, 2015 at 11:19 am

    5 stars
    I made these last night for breakfast this morning, and my 3-year-old loved them! They are so moist, and just sweet enough. I didn't have ginger on hand, so I used lemon zest instead. Was very good, but I'd be curious to see the difference with the ginger. Next time I will add raisins and walnuts for extra texture. I love your site, and every recipe I've tried from your book has been delicious!

    Reply
  24. tess says

    January 12, 2015 at 12:28 pm

    5 stars
    Can you post directions on how to freeze individually? Thank you!

    Reply
    • Amy Taylor (comment moderator) says

      January 13, 2015 at 4:19 pm

      Hi Tess. I guess I would use (and re-use and re-use...) individual small zipper bags or sandwich bags for one or two muffins, removing the excess air from each bag. With zipper bags, I use a straw to suck out the air. :)

      Reply
  25. Kristin says

    January 10, 2015 at 4:36 pm

    Hi I am not seeing the carrot cake recipe online but am using the recipe in the book. I used the cook time and its not done... will cook longer but curious since the recipe is not onine if maybe the cook time is not correct? Any insight is appreciated. Thanks and love the book!

    Reply
  26. reinu says

    January 09, 2015 at 12:51 pm

    perfect healthy recipe

    Reply
  27. Opal King says

    January 09, 2015 at 9:26 am

    4 stars
    I made these yesterday afternoon and absolutely loved them! The flavor was amazing, especially for something without sugar and with whole wheat. I let them cool completely, even longer than usual, then put them in a tupperware container. When I woke up today, the carrots that were close to the surface of the muffin had turned green! Is this normal? Is this mold? I went through a some of the comments and didn't see anything. I used a store bought bag of matchstick carrots so worried maybe they were too big? I want to make these again, but want to make sure it isn't mold!

    Reply
    • Amy Taylor (comment moderator) says

      January 12, 2015 at 11:23 am

      Hello Opal. Carrots sometimes oxidize when they come in contact with baking soda which can result in the green color.

      Reply
  28. Tina says

    January 08, 2015 at 9:22 pm

    great recipe! Do these need to be refrigerated?

    Reply
    • Amy Taylor (comment moderator) says

      January 12, 2015 at 11:25 am

      Hi Tina. I typically freeze these if I need to keep them past a couple days. The fridge tends to dry them out.

      Reply
  29. Candace says

    January 07, 2015 at 7:57 pm

    5 stars
    I made these today and they were a hit with my kids and husband!! My husband wants me to make a double batch to bring to his office! On a side note, do u know if u can use coconut flour instead to make them gluten free?? Thanks!!

    Reply
    • Amy Taylor (comment moderator) says

      January 09, 2015 at 9:39 am

      Hi Candace. You can certainly experiment with different flour combinations in order to make a gluten free version. You could not substitute coconut flour 1:1, however, because it is very different from wheat flour.

      Reply
  30. Jaqueline says

    January 07, 2015 at 12:39 pm

    Do you recommend salted or unsalted butter??????

    Reply
    • Amy Taylor (comment moderator) says

      January 08, 2015 at 7:54 pm

      Hi there. I have used both in this recipe and do not notice any difference.

      Reply
  31. Marlana says

    January 06, 2015 at 2:56 pm

    5 stars
    I still can't get over how good these muffins taste! These were a hit with my whole family. Thank you!

    Reply
  32. Carol Armstrong says

    January 04, 2015 at 2:32 pm

    3 stars
    They're OK, but a bit boring and are more cake-like than muffin-like.
    The recipe supposedly makes 1 doz "oversized" muffins? It actually makes 1 doz regular-sized cupcakes.

    Reply
  33. Jacque says

    December 31, 2014 at 3:20 pm

    I've tried these twice and both times the outsides are cooked fully, but the inside is all mushy and wet. Maybe they're supposed to be? Or maybe I need to squeeze the moisture out of the carrots?

    Reply
    • Amy Taylor (comment moderator) says

      January 12, 2015 at 8:25 am

      Hi there. Ovens can vary as to how they cook. You may want to cook a little longer and reduce the temperature a little.

      Reply
  34. Samantha says

    December 29, 2014 at 4:27 pm

    Would these still have that muffin/cake like fluffiness if I just eliminate the honey (or maple syrup)? I want to use this recipe for my daughter's smash cake, but because I'm trying to encourage less sweets I only want it sweetened with the applesauce. Thanks!

    Reply
    • Amy Taylor (comment moderator) says

      January 08, 2015 at 2:46 pm

      Hi. We've not tried eliminating the honey. If you add more applesauce in its place, I think it would work okay.

      Reply
  35. Nicole says

    December 29, 2014 at 2:45 pm

    I just made these - but had to sub the whole wheat flour with 210g of gluten free flour due to an intolerance in our household. Let me just say, my house smells amazing! My 4 year old had a blast helping me. AND they taste GREAT!!!

    Reply
  36. Sara says

    November 30, 2014 at 10:56 pm

    5 stars
    I subbed parsnips from our CSA box for the carrots and the muffins were a huge hit with my kids! I also added in some nutmeg which was a nice touch. I make the original version on a regular basis for my preschooler and baby. Love how moist they are!

    Reply
  37. Brittany says

    November 22, 2014 at 10:09 am

    5 stars
    Love these muffins and have made many times as regular muffins, mini muffins and mini loaf breads. I used coconut oil this time and it seems the carrot flavor is more pronounced. Definitely like butter in these ones better. The one draw back on these muffins for me is the time to grate carrots. I pulled out my kitchen aid mixer and grater attachments and made enough extra grated carrots to freeze 3 double batches so we will see how the frozen carrots work out. i plan to fully thaw before adding. I always double this recipe and get 30 regular muffins. I have made these for non foodies and have always received compliments. I think this is one that anyone will enjoy! Thanks! Keep them coming.

    Reply
  38. Shawnna says

    November 20, 2014 at 4:17 pm

    Where did the recipe go? I was hoping to make these tonight. Help!

    Reply
    • Amy Taylor (comment moderator) says

      November 20, 2014 at 9:21 pm

      Hi. Sorry, there must have been a short glitch.

      Reply
  39. Kajay says

    November 20, 2014 at 4:05 pm

    I cant see the recipe on the website. Has it been moved or is there something wrong? I have tried google crome and internet explorer

    Reply
    • Amy Taylor (comment moderator) says

      November 20, 2014 at 9:20 pm

      Hi. Sorry, there must have been a short glitch.

      Reply
  40. Barb says

    November 17, 2014 at 10:03 pm

    Can you use whole wheat pastry flour?

    Reply
    • Kelly says

      November 18, 2014 at 1:16 pm

      In my opinion, it's perfect for muffins. All I use.

      Reply
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