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These carrot applesauce muffins are made with whole wheat flour and other real food ingredients. This recipe is a huge hit with the kids; they taste just like carrot cake!
Featured Comment
This was a HUGE hit with all three of my kids! Thank you for this recipe. It is in regular rotation and gets rave reviews every time!
For those who are looking for cupcakes for little ones (i.e. smash cake), I would totally top one of these off with some homemade unsweetened whipped cream and call it a day. This would be perfect for your baby! And if you prefer to avoid honey for your really little ones (not recommended younger than 1 year old), then 100% pure maple syrup would work just fine as a substitute.
Are Muffins Made with Carrot and Apple Healthy?
Healthy can mean different things to different people. Since these carrot muffins are made with whole wheat flour and honey instead of sugar, they’re definitely a lot healthier than most muffin recipes.
Feel free to make your own applesauce! Read up on the types of apples.
The carrot and applesauce add a sweet flavor, but they’re also nutritious, too! These Sweet Potato Muffins are another healthy option.
Why Carrot is Great in Muffins
If you’re a fan of carrot cake you probably already know how delicious carrots can be as a baking ingredient. Naturally sweet, carrots help soften (and sweeten) anything they’re baked into. And, while it’s not the same as a complete healthy meal, it’s always nice when you can add a few extra veggies into what we eat.
How to Make This Homemade Carrot Muffin Recipe
- First, preheat the oven to 350 degrees F and line your muffin pans.
- While the oven heats, whisk together the dry ingredients (whole wheat flour, baking soda, cinnamon, ginger, and salt).
- In a separate bowl (I use an electric mixer), beat the softened butter, honey, egg, and vanilla on medium speed.
- Set mixer to low, then slowly beat in the flour mixture.
- Fold in the applesauce and shredded carrots.
- Divide batter evenly among 12 muffin cups a bake for 22-24 minutes, or until a toothpick pressed into the center comes out clean.
Can You Freeze These Muffins?
Absolutely! All my muffin recipes freeze well, including these carrot muffins. To freeze, simply cool completely then place in an airtight container. Muffins keep in the freezer for up to three months.
To thaw, warm up on the counter overnight or microwave for about 30 to 60 seconds. You can also put frozen muffins right into kids’ lunches and they should be thawed by the time they’re ready to eat!
Tips for Shredding Carrots
- You’ll need to peel your carrots before shredding them; carrot peels can sometimes make carrot muffins taste bitter.
- The easiest way to shred carrots is with a box style cheese grater, preferably using the smaller size holes.
- Some food processors can also shred carrots.
Can This Recipe Be Doubled?
Yes, but sometimes muffins can bake differently when the recipe is doubled, depending on your oven. If you run into issues, I’d recommend baking one tray of muffins at a time, which is better for even baking anyway!
Will This Recipe Work for Mini Muffins or a Loaf?
You can definitely make muffin muffins instead of full-sized ones, just adjust the cooking time to about 12-14 minutes so they don’t overbake.
We haven’t had the chance to try this recipe in a loaf pan or as a cake yet, but if you do let us know how it turns out in the comments!
Make Carrot Cake Muffins for Dessert
This recipe already uses carrot cake spices and ingredients—they’re basically carrot cake muffins! But if you want to turn these muffins into an easy real food dessert, simply add frosting.
Carrot cake is normally topped with cream cheese frosting, but that’s loaded with powdered sugar. Instead, make a cream cheese glaze by mixing 8 oz of softened cream cheese, ¼ cup of honey, and ½ teaspoon of vanilla.
Check out these Baked Apples too!






meredith says
Veganized these using flax egg and Earths Balance vegan soy free butter! So yummy! thank you for such wonderful recipes :)
Emily says
SO delicious! :)
Kelly Dumas says
I am also curious about the calorie count. My husband and I are trying to eat ""clean" and have do so for a little over a month. We feel 100% better with more energy and we are enjoying the taste of real food. I'm always looking for recipes using unprocessed items. Looking forward to having one of these with my decaf and soy milk tomorrow morning.;)
Assistant to 100 Days (Amy) says
Hi Kelly. Glad you are doing well on your clean eating journey. Regarding calorie counts, we do not provide nutrition information on our recipes. We want people focusing on eating real foods/more whole foods and less on numbers. Here are some posts which help explain our philosophy: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/, https://www.100daysofrealfood.com/2013/01/23/portion-size-matters/, and https://www.100daysofrealfood.com/10-reasons-to-cut-out-processed-food/ and https://www.100daysofrealfood.com/2011/04/29/mini-pledge-week-8-stop-eating-when-you-feel-full/. There are many tools available online which can help calculate nutrition detail for recipes. ~Amy
Peg O'Harrow says
I love these! I didn't have applesauce, so used a couple of cored apples with peelings on and baked them in the microwave until soft. Worked great. Can't wait for a visit from grandchildren. Will mail a care package.
Valerie says
These were great! I halved the recipe, used organic coconut oil instead of butter, and I made them into mini muffins which baked for about 11 minutes at 350 (half recipe made 18 mini muffins). These are perfect for my toddler and he loved them. Keeping them in the freezer and defrosting as needed. These were surprisingly sweet considering there's zero sugar - I could see cutting back a bit on the honey and not really missing it. Thank you for the recipe!
Madison says
I was just wondering if you offer nutrition facts for your recipes?
Assistant to 100 Days (Amy) says
Hi Madison. . We do not provide nutrition information on our recipes. We want people focusing on eating real foods/more whole foods and less on numbers. Here are some posts which help explain our philosophy: https://www.100daysofrealfood.com/2013/01/04/healthy-eating-defined/, https://www.100daysofrealfood.com/2013/01/23/portion-size-matters/, and https://www.100daysofrealfood.com/10-reasons-to-cut-out-processed-food/ and https://www.100daysofrealfood.com/2011/04/29/mini-pledge-week-8-stop-eating-when-you-feel-full/. There are many tools available online which can help calculate nutrition detail for recipes. ~Amy
Joan Dahlen says
I just thought you might find it fun to know that I am offering my college freshmen (English 101 and First Year Seminar - a total of 75 students)an alternative quiz challenge. They can go on your web site, read about the food challenge and take it for seven days. They all eat in the campus dining halls or cafes, but my university is famous for their naturopathic medical center, so I will also find out if the students are offered unprocessed food choices.They have to keep a journal for the seven days and also write a summary of their experience - all for a guaranteed quiz grade of "A".Don't you love this idea? I'll keep you posted.
Joan Dahlen says
Hi Lisa,
These muffins are amazingly moist and delicious. I can't believe how well they go from freezer to lunch pack and by lunchtime have thawed enough to be as fresh as the morning I made them. I didn't have any applesauce, so I sliced two large Gala apples and put the slices in a saucepan with 1/4 cup of water and 1/4 cup sugar. I cooked the apples about ten minutes until soft enough to mash up with my potato masher. Voila - I had about two cups of applesauce.
KaJo says
I made my own applesauce too. I just add a splash of water to get the apples started cooking but didn't add any sugar. The applesauce was plenty sweet without it. I had some Galas that were getting a bit soft for eating out of hand.
Boomer says
Homemade apple sauce is super easy... it is making baby food! Peel and core and slice up a couple of apples. I like steaming mine, or you could boil. Probably need 10 mins. Pulse with a Moulinex or an immersion blender, or blender if that is all you have. Make extra and pop in the freezer baggied up in 1 cup portions for other uses. Apple sauce can also fully or partially replace oil in cakes.
Megan says
Your husband is nuts. These muffins are awesome! I, too, was a bit skeptical at how they would turn out. But oh. My. Goodness. Yum!!! They made my house smell soooo good. And my husband, who is also not a muffin fan unless it's a blueberry one, said it tasted like a blueberry muffin without the blueberries (meaning he liked it). I love your blog. Your ideas and recipe index are the biggest helps in trying to cut out more and more processed food from our plates. Don't get me wrong:i want to eat healthily, but i don't want to eat cardboard. Or gravel. Your recipes make me wonder why i didn't do this sooner. Thank you!!!
Eliza says
I used maple syrup instead of honey and almost doubled the carrots. They're really great muffins. I think they'd make a great cake with maple frosting. I'll try them again with just a bit more sugar, maybe some coarse sugar on top.
Hilary says
I don't have an electric whisk or beater. Am I better off using an immersion blender or hand whisk? Thanks to anyone who can answer.
People's Nutritionist says
This looks great! I can't wait to give it a try!
shannon royce says
made these last night and used the flax egg and the house smelled delicious and my family loved these!!!
Tasha says
Hi I cant wait to try these muffins.was just wondering though if wholewheat flour is the same as wholemeal? I live quite rural and cant find wholewheat. Thanks!
Assistant to 100 Days (Amy) says
Hi Tasha. The terms wholemeal and whole wheat are often used interchangeably. :) Have fun baking! ~Amy
Theresa says
How do I "fold" the applesauce into the mixture (Sorry I am not a baker..but I am trying :) )
Assistant to 100 Days (Amy) says
Hi Teresa. That's okay. :) This should help: http://www.wikihow.com/Fold-%28Baking%29. ~Amy
Lynn says
Lisa-Which liners do you typically use? Have you had problems with the paper liners when you freeze the muffins? I've done your other muffins in paper liners and frozen them. After thawing, the paper sticks so bad I have to cut sections of the muffin off to get all of the paper off! Love your blog and all of the recipes you keep churning out-thank you!!!
Kimberly says
I wonder how these would turn out with gluten free flour... Has anyone tried them that way?
Joy says
I was going to ask the same question!! I will probably try them out with Jules Gluten Free Mix, but I want to experiment using some more whole grain GF flours too, like buckwheat, etc.. over rice/tapioca, etc. Let me know what you find and I'll do the same!
Melissa says
These are awesome! My 4 year old son (who is a picky eater) and I made them today. He has refused to eat carrots, wasn't thrilled about touching them to put them in the batter, and exclaimed, "These are very good!" while devouring a muffin soon after they came out of the oven. My 6 year old daughter was hesitant to try it with her dinner tonight, but she really liked it, too. We added raisins to the batter. Thank you for the delish recipe!
Ashley says
Ok, can I just say I was not sure about how these would turn out...they are SO good!! Pleasantly surprising, and my kids love them! I am a huge fan of your page, I am new to cutting processed foods and I don't know how I would have even able to do it without guidanc, info, and recepies from this page! Every thing I have tried I have loved and so has my family! I feel so much better after changing what I feed my family, thank you so much for the time you take to put into this and excuse my French but screw the negative comments! Your lunch ideas have been so helpful as well, thank you thank you Lisa! Trying the chili this weekend, can't wait!
Heather says
Can I substitute gluten free flour and a dairy substitute for butter for the ingredients to make it gluten and dairy free? Also are the substitutes exact or do I have to modify them somehow? Thanks somuch for this blog!
Assistant to 100 Days (Amy) says
Hi Heather. You can easily substitute coconut oil for the butter but we've not tried a gluten free adaptation. It might take some trial and error to get it right. Look for whole grain gluten free flours and whole grain flour blends to keep it as real as possible. :) ~Amy
beth says
Made these for the 1st time today!!!!! YUMMY..had to eat 2 to "check for consistency."" Haha...will be making these again-esp since I recently bought pumpkin muffins from local supermarket labelled "pumpkin raisin"....ate 2 had no raisins...ate the remaining 2=no raisins...turned over packaging fo listed ingredients""RAISINS"" MY LONG POINT::IF they are listing ingredients that are NOT in the product can I assume they are NOT listing ingredients that ARE...ie nuts milk soy......if anyone had allergies forget relying on store packaging for what or what not may lurk within .
Allison says
My two year old daughter helped me make these, and she absolutely loved them! I told her they were "healthy", and she said "yum, I love healthy"!
Chayne says
These turned out absolutely delicious! Even my 9 yr old daughter who does not eat either carrots or apples found them yummy. Your pumpkin muffins have been a staple in our home since I first started using your recipes, but here in the Southern Hemisphere pumpkins have been out of season. Thankfully just starting to see some again!
Cris says
I'm still just dabbling in the "real food" world and made these this morning as a trial. I love them! Can't wait for my 12-year-old to get home from school and give me his opinion!
Elle says
I have strawberry applesauce I need to get rid off since my little one doesn't like them anymore. Can I use this instead of plain applesauce? Or would it taste weird :-)
Assistant to 100 Days (Amy) says
Hi Elle. I suppose it would change the flavor a bit but I am not sure how much. ~Amy
Carly says
I followed the recipe exactly, and these turned out perfect! They are so moist and delicious. Thanks for sharing!!
Katy says
Yum! Can you substitute spelt flour for the whole wheat? Thanks!
Assistant to 100 Days (Amy) says
Hi Katy. While we haven't tried in this recipe, I think it will work fine. I love spelt! :) ~Amy
Melissa says
So I tried these with 1/4c butter and 1/4 c pumpkin puree and they were delicious...very moist. Next time I think I'll sub all the butter for pumpkin...not that I'm against butter but we get enough the way it is and you can never have enough veggies!! Awesome recipe...my 2 and 4 yr olds loved them.
Patti says
Made these last night and they are wonderful. Added some raisins and walnuts. Perfect with a green smoothie!
Catherine says
Just wondering how the whipped cream frosting holds up and for how long outside the fridge? Planning to make these for son's 2nd birthday and would love to use a simple, lightly sweetened whipped cream. Thanks!
Assistant to 100 Days (Amy) says
Hi Catherine. I know that with the chocolate cake with whipped cream frosting, Lisa recommended serving it within a few hours of frosting. ~Amy
Pam says
What kind of flour can you recommend in place of wheat? Would coconut or almond flour work?
Nicholl Moist says
I am going to try this today. My girls love muffins...and these are healthy ones :) Thanks!!!
Chelsea says
If I doubled this recipe, do you think it would be tasty with half carrots and half zucchini? Trying to get my little one and hubby to eat more veggies!
Assistant to 100 Days (Amy) says
Hi Chelsea. We've not tried but let us know if you do and how they turn out. ~Amy
Annette says
I made these this morning for breakfast. YUM! They were so moist. I had about a quarter cup of pumpkin left from another recipe, so I used that, then added applesauce to make the 3/4 cup. I will definitely add this to the recipe file.
Ashley says
These look yummy! Going to bake them tomorrow! I was wondering though how do you package your muffins to store in the freezer. I love that idea just wondering if there is a special "safe" way in storing them?
Assistant to 100 Days (Amy) says
Hi Ashley. You could use any freezer-safe airtight container. I prefer to use zipper bags because I can get most of the air out. Be sure they are cool before you freeze them. ~Amy
Amy says
I made a batch of these today for breakfast tomorrow and for my daughter to take as the group snack for her Destination Imagination meeting. I tried one and it was delicious. Can't wait for breakfast! A little rich with all the butter. Next time I will not add quite as much and mash a banana to add. Was super easy to shred the carrot with my Ninja with plenty left over to add to dinner salads. Thanks!
Aimee says
I just made these and my house smells fantastic!
They turned out very moist, and practically fall out of the foil liners I used. Now I know what we'll do for her first birthday cake. My 3 kiddos & I give these an A+
Aimee says
We also omitted the butter for coconut oil instead.
Ashley says
I made these the other day when you posted the recipe on Facebook...I've already made my second batch!!! Everyone in my house loves these! I think my next batch I might add raisins.
Martha says
Made these today. Used 1/2 stick of butter and 1/4 cup of coconut oil. Excellent. Your pumpkin muffins still are my favorite.
Kerri says
What are your thoughts on using coconut oil instead of butter and coconut palm sugar instead of honey?
Assistant to 100 Days (Amy) says
Hi Kerri. Coconut oil can be subbed 1:1 for butter. We have not tried to sub out the honey. Lisa uses honey or maple syrup whenever possible. As for coconut palm sugar, in general, it is a less processed and lower glycemic alternative to other sugars. There is question, however, to its sustainability. ~Amy