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Home » Recipes

Whole Wheat Carrot Applesauce Muffins

151 Reviews / 4.8 Average
This recipe is by far the new favorite muffin in our house. Move over blueberry, zucchini, and even pumpkin—these are so deeelicious and could be eaten with breakfast, lunch, or even dinner (maybe as a side to some fall soup?)!
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carrot applesauce muffins

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These carrot applesauce muffins are made with whole wheat flour and other real food ingredients. This recipe is a huge hit with the kids; they taste just like carrot cake!

Featured Comment

This was a HUGE hit with all three of my kids! Thank you for this recipe. It is in regular rotation and gets rave reviews every time!
- Ashley Oswald

For those who are looking for cupcakes for little ones (i.e. smash cake), I would totally top one of these off with some homemade unsweetened whipped cream and call it a day. This would be perfect for your baby! And if you prefer to avoid honey for your really little ones (not recommended younger than 1 year old), then 100% pure maple syrup would work just fine as a substitute.

Are Muffins Made with Carrot and Apple Healthy?

Healthy can mean different things to different people. Since these carrot muffins are made with whole wheat flour and honey instead of sugar, they’re definitely a lot healthier than most muffin recipes.

Feel free to make your own applesauce! Read up on the types of apples.

The carrot and applesauce add a sweet flavor, but they’re also nutritious, too! These Sweet Potato Muffins are another healthy option.

Why Carrot is Great in Muffins

If you’re a fan of carrot cake you probably already know how delicious carrots can be as a baking ingredient. Naturally sweet, carrots help soften (and sweeten) anything they’re baked into. And, while it’s not the same as a complete healthy meal, it’s always nice when you can add a few extra veggies into what we eat.

How to Make This Homemade Carrot Muffin Recipe

  1. First, preheat the oven to 350 degrees F and line your muffin pans.
  2. While the oven heats, whisk together the dry ingredients (whole wheat flour, baking soda, cinnamon, ginger, and salt).
  3. In a separate bowl (I use an electric mixer), beat the softened butter, honey, egg, and vanilla on medium speed.
  4. Set mixer to low, then slowly beat in the flour mixture.
  5. Fold in the applesauce and shredded carrots.
  6. Divide batter evenly among 12 muffin cups a bake for 22-24 minutes, or until a toothpick pressed into the center comes out clean.

Can You Freeze These Muffins?

Absolutely! All my muffin recipes freeze well, including these carrot muffins. To freeze, simply cool completely then place in an airtight container. Muffins keep in the freezer for up to three months.

To thaw, warm up on the counter overnight or microwave for about 30 to 60 seconds. You can also put frozen muffins right into kids’ lunches and they should be thawed by the time they’re ready to eat!

Tips for Shredding Carrots

  • You’ll need to peel your carrots before shredding them; carrot peels can sometimes make carrot muffins taste bitter.
  • The easiest way to shred carrots is with a box style cheese grater, preferably using the smaller size holes.
  • Some food processors can also shred carrots.

Can This Recipe Be Doubled?

Yes, but sometimes muffins can bake differently when the recipe is doubled, depending on your oven. If you run into issues, I’d recommend baking one tray of muffins at a time, which is better for even baking anyway!

Will This Recipe Work for Mini Muffins or a Loaf?

You can definitely make muffin muffins instead of full-sized ones, just adjust the cooking time to about 12-14 minutes so they don’t overbake.

We haven’t had the chance to try this recipe in a loaf pan or as a cake yet, but if you do let us know how it turns out in the comments!

Make Carrot Cake Muffins for Dessert

This recipe already uses carrot cake spices and ingredients—they’re basically carrot cake muffins! But if you want to turn these muffins into an easy real food dessert, simply add frosting.

Carrot cake is normally topped with cream cheese frosting, but that’s loaded with powdered sugar. Instead, make a cream cheese glaze by mixing 8 oz of softened cream cheese, ¼ cup of honey, and ½ teaspoon of vanilla.

Check out these Baked Apples too!

carrot applesauce muffins

Whole-Wheat Carrot Applesauce Muffins

This recipe is by far the new favorite muffin in our house. Move over blueberry, zucchini, and even pumpkin—these are so deeelicious and could be eaten with breakfast, lunch, or even dinner (maybe as a side to some fall soup?)!
151 Reviews / 4.8 Average
Prep Time: 10 minutes mins
Cook Time: 22 minutes mins
Total Time: 32 minutes mins
Course: Breakfast, Snacks & Appetizers, Treats
Cuisine: American
Method: Baked Goods, Freezer Friendly
Diet: Peanut/Tree Nut-Free, Vegetarian
Print Recipe
Servings: 12 muffins
Save Recipe Saved!

Ingredients
  

  • 1 ½ cups whole-wheat flour
  • 1 teaspoon baking soda
  • 1 teaspoon cinnamon (ground)
  • ½ teaspoon ginger (ground)
  • ½ teaspoon salt
  • ½ cup butter (softened (but not melted), 1 stick)
  • ½ cup honey
  • 1 egg
  • 1 teaspoon pure vanilla extract
  • 1 cup applesauce (unsweetened)
  • ¾ cup carrot (shredded)

Instructions
 

  • Preheat your oven to 350 degrees F. Line a muffin pan with paper, foil, or silicone liners, and set aside.
  • In a medium bowl whisk together the flour, baking soda, cinnamon, ginger, and salt.
  • In a large bowl fitted with an electric whisk (or beaters), mix the butter, honey, egg and vanilla together on medium speed. Turn the speed down and slowly add in the flour mixture until well combined. The batter will be fairly thick at this point.
  • Using a spatula, carefully fold in the applesauce and carrots (I used a cheese grater to shred the carrots). Divide the batter evenly among the muffin cups. Bake for 22 to 24 minutes or until a toothpick comes and muffins are beginning to turn golden brown on top. Enjoy!

Notes

We recommend organic ingredients when feasible.
Nutrition Facts
Nutrition Facts
Whole-Wheat Carrot Applesauce Muffins
Amount Per Serving
Calories 179 Calories from Fat 72
% Daily Value*
Fat 8g12%
Saturated Fat 5g31%
Cholesterol 34mg11%
Sodium 267mg12%
Potassium 70mg2%
Carbohydrates 25g8%
Fiber 2g8%
Sugar 14g16%
Protein 3g6%
Vitamin A 1600IU32%
Vitamin C 0.7mg1%
Calcium 19mg2%
Iron 0.5mg3%
* Percent Daily Values are based on a 2000 calorie diet.
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49.7K shares

About Lisa Leake

Lisa is a wife, mother, foodie, blogger, and #1 New York Times Best-selling author who is on a mission to cut out processed food.

Comments

  1. Jacqueline says

    August 05, 2020 at 10:17 pm

    5 stars
    I’ve made a modified version of this twice now with huge success! Our favorite version: maple syrup instead of honey, 1/3 c coconut oil instead of 1/2 c butter, add a few handfuls of raisins, and a handful or two of walnuts, finely chopped. Thanks for the inspiration! I love this site.

    Reply
    • Jacqueline says

      August 05, 2020 at 10:19 pm

      Oh, and I make mini muffins instead of full size. Eating a couple of them feels like more of a treat to me than one big muffin, even if I know it’s just an illusion! ‍♀️ I was surprised to find that I still needed to bake them the full time.

      Reply
  2. Annie says

    April 18, 2020 at 8:34 am

    Could you use fresh ginger in place of dried/ground? Thanks!

    Reply
    • Scarlett says

      May 01, 2020 at 8:49 pm

      Can I make it with no eggs?

      Reply
      • Lisa Leake says

        May 04, 2020 at 3:21 pm

        I don’t think that would turn out well, I would recommend finding a muffin recipe that’s already been adapted without eggs.

      • Anne says

        January 21, 2021 at 1:22 am

        5 stars
        I made them with a flax “egg” and they turned out great!

  3. annie bergeron says

    March 25, 2020 at 12:16 pm

    where do we include the apple sauce in the preparation?

    Reply
    • 100 Days Admin says

      March 27, 2020 at 10:35 am

      Hi Annie, you fold it in during step 4, right before you add the batter to the muffin cups. - Nicole

      Reply
  4. Reine says

    January 25, 2020 at 8:55 am

    5 stars
    We love these!!!!! How many muffins are a serving? I am meal prepping so I want to calculate caloric intake. Thank you

    Reply
  5. gmoney says

    December 01, 2019 at 9:12 pm

    Tried this with a full cup of grated carrots and maple syrup instead (1:1 ratio) of honey and turned out great! Had to leave them in the oven for probably 30 mins or so. tastes very healthy and not too sweet.

    Reply
  6. Angela says

    October 20, 2019 at 11:33 am

    5 stars
    So delicious !!! Love eating them warm with butter (probably not the healthiest) but they are whole wheat! (I didn’t include the carrots, one of these times I’ll take the plunge) Thank you for the yummy recipe!

    Reply
  7. Ashley Oswald says

    September 06, 2019 at 7:40 am

    5 stars
    This is a staple in our house! We always have some on hand in the freezer. I used to make these with maple syrup when my son was under 1 and for his birthday this was his smash cake! These are perfect for snacks or breakfast on the go!
    Quick question, has anyone tried using whole wheat pastry flour for this recipe? I can't get white whole wheat flour in my town and I'm waiting for it to come in the mail but we have a hankering for these muffins!

    Reply
    • 100 Days Admin says

      September 06, 2019 at 1:12 pm

      We haven't tried it with pastry flour yet, it may just give it a slightly different texture though. Let us know! - Nicole

      Reply
    • Arlene says

      May 04, 2020 at 11:19 am

      From what I understand, whole wheat pastry flour and white whole wheat flour are the same thing. :)

      Reply
      • Kristin says

        October 28, 2020 at 2:26 pm

        They are not the same. Whole wheat pastry flour has a lower protein content. It’s softness makes it great for things like pancakes, waffles, crepes, scones, biscuits, etc. For anything that needs structure like yeasted whole wheat bread, pasta or cake, stick with white whole wheat flour. If you only plan to buy 1 kind, stick with white whole wheat as it can be used in any application.

  8. Katie Holton says

    August 15, 2019 at 9:25 am

    I don’t have regular applesauce. Can I use cinnamon?

    Reply
    • 100 Days Admin says

      August 19, 2019 at 12:22 pm

      Hi Katie, that should be just fine...maybe just decrease the amount of cinnamon you add in the beginning unless you don't mind the taste. Should come out yummy either way! - Nicole

      Reply
  9. Nesreen says

    February 07, 2019 at 12:01 am

    5 stars
    Just made these for a snack to take to a play date
    I doubled the recipe and used 3/4 coconut oil and 1/4 olive oil
    Was generous with the grated carrots (prob about 2cups)
    Used 1/2 tsp all spice
    1/2 tsp nutmeg in place of ginger
    Sprinkled a dash of dark brown sugar on top before baking
    They turned out so moist and delicious

    Thanks so much!

    Reply
  10. Shannon says

    July 22, 2018 at 5:33 pm

    Could you use almond flour in place of whole wheat?

    Reply
    • 100 Days Admin says

      September 23, 2019 at 4:35 pm

      Yes, it should be a 1:1 conversion, but might give you a different texture and flavor. - Nicole

      Reply
  11. Linda says

    May 20, 2018 at 8:34 pm

    I really like using instant pot for baked goods because 1) it makes a more reasonable portion for a family and 2) hello -Instant Pot which means I can close the lid and walk away.

    Any suggestions to make in Instant Pot? Thanks for all the great recipes!

    Reply
    • Amy Taylor (comment moderator) says

      May 25, 2018 at 11:02 am

      Hi there. This might help: https://www.womenshealthmag.com/food/a19131155/instant-pot-recipe-conversion/ and you can find several other articles with advice if you Google it. We don't have much experience converting recipes to the instapot.

      Reply
  12. Afsoon says

    February 01, 2018 at 8:28 am

    5 stars
    These were a big hit in our house. Thank you!

    Reply
  13. Julia says

    January 26, 2018 at 12:25 pm

    Can I freeze these? A

    Reply
    • Amy Taylor (comment moderator) says

      February 07, 2018 at 11:13 am

      Absolutely.

      Reply
  14. Christianne says

    January 09, 2018 at 1:28 am

    Do you know if I were to bake this as a cake for a smash cake how long, what temp, what size pan, etc?

    Reply
    • Amy Taylor (comment moderator) says

      January 12, 2018 at 12:49 pm

      Hi there. We've never attempted to make a cake from this. I'd hate to give you bad advise on such an important cake! ;)

      Reply
  15. Ryann says

    September 15, 2017 at 3:36 am

    Thank you for this recipe! This is exactly what I've been looking for! I'm going to try them out tomorrow.

    Reply
  16. Elissa Colpitts says

    September 07, 2017 at 9:34 am

    Hi, have you tried these with maple syrup rather than honey? Thanks.

    Reply
    • Amy Taylor (comment moderator) says

      September 13, 2017 at 12:27 pm

      Yes, I have at a 1:1 ratio.

      Reply
      • Erin says

        October 18, 2017 at 7:45 pm

        5 stars
        Do they taste as good with the maple syrup? Want to make these tomorrow but need to get honey. Have maple syrup on hand! Love them with the honey!

      • Amy Taylor (comment moderator) says

        October 23, 2017 at 12:57 pm

        I think so. :)

  17. Patti says

    August 18, 2017 at 8:58 am

    Can you tell me how many carbs are in these muffins ,my husband is diabetic ,these are delicious! Thank you

    Reply
    • Amy Taylor (comment moderator) says

      August 24, 2017 at 12:18 pm

      Hi Patti. I am sorry but we do not provide nutrition details. There are online tools that can help: https://www.verywell.com/recipe-nutrition-analyzer-4129594

      Reply
  18. Lauren says

    July 21, 2017 at 11:00 am

    5 stars
    Have made these multiple times and they are always a huge hit!! I typically have to make more than one batch.

    Reply
  19. Lily says

    May 15, 2017 at 4:07 pm

    Made these muffins today and my entire family loves them! All 3 kids and hubby approved and asked for me to make them every week. Thank you for a great recipe!

    Reply
  20. Dia says

    April 01, 2017 at 2:52 pm

    5 stars
    These muffins are delicious! This recipe is definitely a keeper!

    Reply
  21. Shannon says

    March 26, 2017 at 9:06 am

    Wonderful recipe!! I followed the recipe exactly, other than added about 1/4 cup coconut flakes. Turned out beautifully. Saving this recipe for sure!

    Reply
  22. Meghan Weidl says

    February 12, 2017 at 8:28 am

    Would this recipe also work in a quick bread pan?

    Reply
    • Amy Taylor (comment moderator) says

      February 15, 2017 at 1:30 pm

      Hi there. We've only baked these as muffins. Let us know if you give it a try.

      Reply
  23. Leni says

    February 02, 2017 at 10:37 am

    Do they freeze well?

    Reply
    • Amy Taylor (comment moderator) says

      February 06, 2017 at 11:48 am

      They do.

      Reply
  24. Abby says

    January 18, 2017 at 12:56 pm

    I followed this recipe with all the necessary ingredients but added raisins and chopped apple. The batter was very different than white all purpose flour and almost seemed fluffy and when the muffins were done they came out dense and seemed to have a doughy taste, no matter how long I cooked them. This was my first time baking with white whole wheat, so I'm not sure if this texture is just common for that type of flour. Next time I might try doing half and half.

    Reply
  25. Terri says

    January 11, 2017 at 8:49 pm

    5 stars
    Delicious! Best muffin recipe I have ever made!

    Reply
  26. Liz says

    November 12, 2016 at 11:16 pm

    These were delicious! I added a little extra carrot because I had so much to use and 1/2 cup oatmeal. I will be making these again!

    Reply
  27. Beth says

    October 30, 2016 at 10:12 am

    Can i use grated zucchini in place of the carrots?

    Reply
    • 100 Days Admin says

      September 23, 2019 at 4:33 pm

      You could, but that's a whole different muffin ;) - Nicole

      Reply
  28. lori says

    September 21, 2016 at 11:41 pm

    I know you don't post nutrition information, but I am an insulin dependent diabetic. I need to know how many carbs are in what I eat so I can take the right dosage of insulin. Any advice on how to calculate this recipe?

    Reply
    • Amy Taylor (comment moderator) says

      September 30, 2016 at 3:02 pm

      Hi there. I understand. This post provides suggestions on tools that will help with all those calculations: https://authoritynutrition.com/5-best-calorie-counters/.

      Reply
  29. Mymi says

    September 03, 2016 at 10:43 pm

    5 stars
    Very good. I replaced the honey with 1/3 cup milkand they turned out great. Thank you for sharing!

    Reply
  30. Megan says

    August 28, 2016 at 11:54 am

    Hi there I was just wondering if I can use anything to replace the honey? Maybe 100% maple syrup? And if I did this how much would I use I wonder?

    Reply
    • Amy Taylor (comment moderator) says

      August 30, 2016 at 12:18 pm

      Hi. You could sub maple syrup in the same amount.

      Reply
  31. Jacqui says

    August 06, 2016 at 12:16 am

    I love this recipe!!! Muffins turned out perfect.
    I had no carrot so added 1 cup of frozen rasberries and 1 cup of coconut and they are so delicious!!!

    Reply
  32. Heather G says

    July 31, 2016 at 2:54 pm

    what would be a real food sub for the butter. My son can't have milk products or eggs. The egg i am good on it is just the butter i am not sure how to sub that and have it be not highly processed.

    Reply
    • Debra H. says

      September 04, 2016 at 1:14 pm

      5 stars
      Coconut oil!

      Reply
  33. Danielle says

    June 05, 2016 at 5:08 pm

    5 stars
    These were very yummy and moist with the perfect amount of sweetness. Thank you!

    Reply
  34. Jennifer B. says

    May 31, 2016 at 4:24 pm

    5 stars
    These are SO good Lisa! I've been playing around with adding yogurt to recipes in place of oil, so I added plain greek yogurt in place of the butter, and threw in 1 c. chopped pecans. Excellent breakfast muffin! :O)

    Reply
  35. Nancy Williams says

    May 23, 2016 at 12:28 pm

    5 stars
    These are so good!! I even replaced the butter with coconut oil. Great to have on hand for a quick snack or breakfast on the go. Thanks!

    Reply
  36. Erin says

    May 17, 2016 at 11:41 am

    I want to make these but don't have any carrot shreds at the moment. I do have a jar (4oz) of pureed baby food. Can I add that instead? I wasn't sure how leaving out the carrots would change the consistency, and if I should add something in to account for that.

    Reply
    • Amy Taylor (comment moderator) says

      May 19, 2016 at 8:35 am

      Hi Erin. We've not tried pureed carrots in this recipe. Let us know how it works for you.

      Reply
  37. Sri says

    May 06, 2016 at 7:57 pm

    I just made this recipe as mini muffins with maple syrup and grated Apple instead of applesauce. I used only 1/2 the ginger and it tastes awesome!! It's sweet without being cloying. Great recipe for kids. I got 24 decent sized mini muffins. Much easier for adult portion control.

    Reply
  38. PEARL says

    May 01, 2016 at 3:37 pm

    5 stars
    would love to try - i dont see baking powder ? is that my istake?
    also can I make this in a cake pan instead of as muffins? what would I adjust? TIA

    Reply
    • Amy Taylor (comment moderator) says

      May 03, 2016 at 11:56 am

      This recipe uses baking soda.

      Reply
  39. Silvia vargas says

    April 19, 2016 at 8:46 pm

    Do I keep these out or do I have to freeze them? I wanna know how long they will last on my counter...

    Reply
    • Amy Taylor (comment moderator) says

      April 24, 2016 at 11:01 am

      If you wish to keep them beyond a few days, I would freeze them.

      Reply
      • Jennifer says

        August 16, 2016 at 2:44 pm

        What's the best way to defrost? Leave in fridge or on counter?

      • Amy Taylor (comment moderator) says

        August 22, 2016 at 12:54 pm

        On the counter. :)

  40. Anna says

    April 17, 2016 at 6:58 pm

    Can you freeze these muffins?

    Reply
    • Amy Taylor (comment moderator) says

      April 18, 2016 at 3:20 pm

      Yes!

      Reply
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